J3_6FYX_013

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AG(PSU)

Length

20 nucleotides

Bulged bases

6FYX|1|2|A|47

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FYX_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1313

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.2

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6FYX|1|2|A|41
6FYX|1|2|G|42
6FYX|1|2|A|43
6FYX|1|2|U|44
6FYX|1|2|U|45
6FYX|1|2|A|46
6FYX|1|2|A|47
6FYX|1|2|G|48
*
6FYX|1|2|C|430
6FYX|1|2|G|431
6FYX|1|2|C|432
6FYX|1|2|G|433
6FYX|1|2|C|434
6FYX|1|2|A|435
6FYX|1|2|A|436
6FYX|1|2|A|437
6FYX|1|2|U|438
*
6FYX|1|2|A|463
6FYX|1|2|G|464
6FYX|1|2|PSU|465

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p