J3_6FYY_013

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AG(PSU)

Length

20 nucleotides

Bulged bases

6FYY|1|2|A|47

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FYY_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1293

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6FYY|1|2|A|41
6FYY|1|2|G|42
6FYY|1|2|A|43
6FYY|1|2|U|44
6FYY|1|2|U|45
6FYY|1|2|A|46
6FYY|1|2|A|47
6FYY|1|2|G|48
*
6FYY|1|2|C|430
6FYY|1|2|G|431
6FYY|1|2|C|432
6FYY|1|2|G|433
6FYY|1|2|C|434
6FYY|1|2|A|435
6FYY|1|2|A|436
6FYY|1|2|A|437
6FYY|1|2|U|438
*
6FYY|1|2|A|463
6FYY|1|2|G|464
6FYY|1|2|PSU|465

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p