J3_6G18_006

3D structure

PDB id

6G18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6G18_006 not in the Motif Atlas

Homologous match to J3_4V88_036

Geometric discrepancy: 0.1422

The information below is about J3_4V88_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6G18|1|2|U|1225
6G18|1|2|G|1226
6G18|1|2|G|1227
6G18|1|2|A|1228
*
6G18|1|2|U|1530
6G18|1|2|A|1531
6G18|1|2|C|1532
*
6G18|1|2|G|1638
6G18|1|2|G|1639
6G18|1|2|A|1640
6G18|1|2|A|1641

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain T

40S ribosomal protein S19

Chain v

Serine/threonine-protein kinase RIO2