J3_6G18_008

3D structure

PDB id

6G18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUCUAG*CGAGAC*GCAAUAA

Length

19 nucleotides

Bulged bases

6G18|1|2|A|1484

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6G18_008 not in the Motif Atlas

Homologous match to J3_4V88_039

Geometric discrepancy: 0.5982

The information below is about J3_4V88_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47248.1

Basepair signature

cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

6G18|1|2|U|1339
6G18|1|2|U|1340
6G18|1|2|C|1341
6G18|1|2|U|1342
6G18|1|2|A|1344
6G18|1|2|G|1345
*
6G18|1|2|C|1384
6G18|1|2|G|1385
6G18|1|2|A|1386
6G18|1|2|G|1387
6G18|1|2|A|1388
6G18|1|2|C|1389
*
6G18|1|2|G|1481
6G18|1|2|C|1482
6G18|1|2|A|1483
6G18|1|2|A|1484
6G18|1|2|U|1485
6G18|1|2|A|1486
6G18|1|2|A|1487

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17