J3_6G5H_010

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

6G5H|1|2|A|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6G5H_010 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1328

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6G5H|1|2|U|1350
6G5H|1|2|G|1351
*
6G5H|1|2|U|1360
6G5H|1|2|G|1361
6G5H|1|2|U|1362
6G5H|1|2|C|1363
*
6G5H|1|2|G|1375
6G5H|1|2|A|1376
6G5H|1|2|U|1377
6G5H|1|2|A|1378
6G5H|1|2|A|1379

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17