J3_6G5I_014
3D structure
- PDB id
- 6G5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State R
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6G5I|1|2|G|1256, 6G5I|1|2|A|1258, 6G5I|1|2|A|1260, 6G5I|1|2|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6G5I_014 not in the Motif Atlas
- Homologous match to J3_8CRE_080
- Geometric discrepancy: 0.1608
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6G5I|1|2|C|1237
6G5I|1|2|U|1238
6G5I|1|2|U|1239
6G5I|1|2|A|1240
6G5I|1|2|A|1241
6G5I|1|2|U|1242
6G5I|1|2|U|1243
6G5I|1|2|U|1244
*
6G5I|1|2|G|1255
6G5I|1|2|G|1256
6G5I|1|2|G|1257
6G5I|1|2|A|1258
6G5I|1|2|A|1259
6G5I|1|2|A|1260
6G5I|1|2|C|1261
6G5I|1|2|C|1262
6G5I|1|2|U|1263
6G5I|1|2|C|1264
6G5I|1|2|A|1265
6G5I|1|2|C|1266
*
6G5I|1|2|G|1516
6G5I|1|2|G|1517
6G5I|1|2|C|1518
6G5I|1|2|U|1519
6G5I|1|2|G|1520
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain S
- 40S ribosomal protein S18
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
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