J3_6GAW_014

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

6GAW|1|AA|A|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GAW_014 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4644

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6GAW|1|AA|C|542
6GAW|1|AA|A|543
6GAW|1|AA|C|544
6GAW|1|AA|C|545
*
6GAW|1|AA|G|788
6GAW|1|AA|C|789
6GAW|1|AA|A|790
6GAW|1|AA|G|791
6GAW|1|AA|U|792
6GAW|1|AA|A|793
6GAW|1|AA|A|794
*
6GAW|1|AA|U|816
6GAW|1|AA|G|817
6GAW|1|AA|A|818
6GAW|1|AA|A|819
6GAW|1|AA|U|820
6GAW|1|AA|A|821
6GAW|1|AA|A|822
6GAW|1|AA|G|823

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

28S ribosomal protein S9, mitochondrial

Chain Am

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1