J3_6GAZ_008

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

6GAZ|1|AA|A|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GAZ_008 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4665

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6GAZ|1|AA|C|542
6GAZ|1|AA|A|543
6GAZ|1|AA|C|544
6GAZ|1|AA|C|545
*
6GAZ|1|AA|G|788
6GAZ|1|AA|C|789
6GAZ|1|AA|A|790
6GAZ|1|AA|G|791
6GAZ|1|AA|U|792
6GAZ|1|AA|A|793
6GAZ|1|AA|A|794
*
6GAZ|1|AA|U|816
6GAZ|1|AA|G|817
6GAZ|1|AA|A|818
6GAZ|1|AA|A|819
6GAZ|1|AA|U|820
6GAZ|1|AA|A|821
6GAZ|1|AA|A|822
6GAZ|1|AA|G|823

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

Mitochondrial ribosomal protein S9

Chain Am

Mitochondrial ribosomal protein S37