J3_6GB2_002

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CCAAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GB2_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1966

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6GB2|1|BA|C|266
6GB2|1|BA|A|267
6GB2|1|BA|G|268
*
6GB2|1|BA|C|279
6GB2|1|BA|C|280
6GB2|1|BA|A|281
6GB2|1|BA|A|282
6GB2|1|BA|C|283
*
6GB2|1|BA|G|307
6GB2|1|BA|A|308
6GB2|1|BA|A|309
6GB2|1|BA|G|310

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BD

Mitochondrial ribosomal protein L2

Chain Ba

Mitochondrial ribosomal protein L37