J3_6GB2_008
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAACAUACUAAACAAAUACAAAAAUACACCAAAAUAAAAUA*UCACCUAACA*UUAUCCUG
- Length
- 59 nucleotides
- Bulged bases
- 6GB2|1|BA|C|21, 6GB2|1|BA|U|22, 6GB2|1|BA|A|31, 6GB2|1|BA|A|33, 6GB2|1|BA|A|39, 6GB2|1|BA|C|40, 6GB2|1|BA|A|41, 6GB2|1|BA|U|48, 6GB2|1|BA|U|66, 6GB2|1|BA|A|67, 6GB2|1|BA|U|96, 6GB2|1|BA|U|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GB2|1|BA|C|14
6GB2|1|BA|A|15
6GB2|1|BA|A|16
6GB2|1|BA|C|17
6GB2|1|BA|A|18
6GB2|1|BA|U|19
6GB2|1|BA|A|20
6GB2|1|BA|C|21
6GB2|1|BA|U|22
6GB2|1|BA|A|23
6GB2|1|BA|A|24
6GB2|1|BA|A|25
6GB2|1|BA|C|26
6GB2|1|BA|A|27
6GB2|1|BA|A|28
6GB2|1|BA|A|29
6GB2|1|BA|U|30
6GB2|1|BA|A|31
6GB2|1|BA|C|32
6GB2|1|BA|A|33
6GB2|1|BA|A|34
6GB2|1|BA|A|35
6GB2|1|BA|A|36
6GB2|1|BA|A|37
6GB2|1|BA|U|38
6GB2|1|BA|A|39
6GB2|1|BA|C|40
6GB2|1|BA|A|41
6GB2|1|BA|C|42
6GB2|1|BA|C|43
6GB2|1|BA|A|44
6GB2|1|BA|A|45
6GB2|1|BA|A|46
6GB2|1|BA|A|47
6GB2|1|BA|U|48
6GB2|1|BA|A|49
6GB2|1|BA|A|50
6GB2|1|BA|A|51
6GB2|1|BA|A|52
6GB2|1|BA|U|53
6GB2|1|BA|A|54
*
6GB2|1|BA|U|61
6GB2|1|BA|C|62
6GB2|1|BA|A|63
6GB2|1|BA|C|64
6GB2|1|BA|C|65
6GB2|1|BA|U|66
6GB2|1|BA|A|67
6GB2|1|BA|A|68
6GB2|1|BA|C|69
6GB2|1|BA|A|70
*
6GB2|1|BA|U|95
6GB2|1|BA|U|96
6GB2|1|BA|A|97
6GB2|1|BA|U|98
6GB2|1|BA|C|99
6GB2|1|BA|C|100
6GB2|1|BA|U|101
6GB2|1|BA|G|102
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B1
- Mitochondrial ribosomal protein L28
- Chain B2
- Mitochondrial ribosomal protein L47
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BI
- Mitochondrial ribosomal protein L9
- Chain BP
- Mitochondrial ribosomal protein L15
- Chain BX
- Mitochondrial ribosomal protein L23
- Chain BY
- Mitochondrial ribosomal protein L24
- Chain Ba
- Mitochondrial ribosomal protein L37
- Chain Be
- Mitochondrial ribosomal protein L41
- Chain Bn
- Mitochondrial ribosomal protein L51
- Chain Bv
- 'Mitochondrial ribosomal protein L59
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