J3_6GB2_009
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAAAAUCUUAAUACUACCAU*AUUGAG*CAACAAAUUCACCAACAUAAUCCCAAAAACUAAUAACAAAC
- Length
- 68 nucleotides
- Bulged bases
- 6GB2|1|BA|C|561, 6GB2|1|BA|U|566, 6GB2|1|BA|A|574, 6GB2|1|BA|C|575, 6GB2|1|BA|U|576, 6GB2|1|BA|A|577, 6GB2|1|BA|U|579, 6GB2|1|BA|A|585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GB2|1|BA|G|482
6GB2|1|BA|U|483
6GB2|1|BA|A|484
6GB2|1|BA|A|485
6GB2|1|BA|A|486
6GB2|1|BA|A|487
6GB2|1|BA|U|488
6GB2|1|BA|C|489
6GB2|1|BA|U|490
6GB2|1|BA|U|491
6GB2|1|BA|A|492
6GB2|1|BA|A|493
6GB2|1|BA|U|494
6GB2|1|BA|A|495
6GB2|1|BA|C|496
6GB2|1|BA|U|497
6GB2|1|BA|A|498
6GB2|1|BA|C|499
6GB2|1|BA|C|500
6GB2|1|BA|A|501
6GB2|1|BA|U|502
*
6GB2|1|BA|A|526
6GB2|1|BA|U|527
6GB2|1|BA|U|528
6GB2|1|BA|G|529
6GB2|1|BA|A|530
6GB2|1|BA|G|531
*
6GB2|1|BA|C|546
6GB2|1|BA|A|547
6GB2|1|BA|A|548
6GB2|1|BA|C|549
6GB2|1|BA|A|550
6GB2|1|BA|A|551
6GB2|1|BA|A|552
6GB2|1|BA|U|553
6GB2|1|BA|U|554
6GB2|1|BA|C|555
6GB2|1|BA|A|556
6GB2|1|BA|C|557
6GB2|1|BA|C|558
6GB2|1|BA|A|559
6GB2|1|BA|A|560
6GB2|1|BA|C|561
6GB2|1|BA|A|562
6GB2|1|BA|U|563
6GB2|1|BA|A|564
6GB2|1|BA|A|565
6GB2|1|BA|U|566
6GB2|1|BA|C|567
6GB2|1|BA|C|568
6GB2|1|BA|C|569
6GB2|1|BA|A|570
6GB2|1|BA|A|571
6GB2|1|BA|A|572
6GB2|1|BA|A|573
6GB2|1|BA|A|574
6GB2|1|BA|C|575
6GB2|1|BA|U|576
6GB2|1|BA|A|577
6GB2|1|BA|A|578
6GB2|1|BA|U|579
6GB2|1|BA|A|580
6GB2|1|BA|A|581
6GB2|1|BA|C|582
6GB2|1|BA|A|583
6GB2|1|BA|A|584
6GB2|1|BA|A|585
6GB2|1|BA|C|586
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B3
- 'Mitochondrial ribosomal protein L30
- Chain B9
- Ribosomal protein
- Chain BE
- ICT1
- Chain BJ
- Mitochondrial ribosomal protein L10
- Chain BK
- Mitochondrial ribosomal protein L11
- Chain BN
- Mitochondrial ribosomal protein L13
- Chain BQ
- Mitochondrial ribosomal protein L16
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain Bo
- Mitochondrial ribosomal protein L52
- Chain Bp
- mL53, MRPL53
- Chain Bq
- Uncharacterized protein
- Chain Bt
- Mitochondrial ribosomal protein L57
- Chain Bx
- Mitochondrial ribosomal protein S18A
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