J3_6GB2_010

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GU*ACUUAUUGAUCC*GAUCAAC

Length

21 nucleotides

Bulged bases

6GB2|1|BA|C|1226, 6GB2|1|BA|U|1231, 6GB2|1|BA|A|1250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GB2|1|BA|G|1182
6GB2|1|BA|U|1183
*
6GB2|1|BA|A|1225
6GB2|1|BA|C|1226
6GB2|1|BA|U|1227
6GB2|1|BA|U|1228
6GB2|1|BA|A|1229
6GB2|1|BA|U|1230
6GB2|1|BA|U|1231
6GB2|1|BA|G|1232
6GB2|1|BA|A|1233
6GB2|1|BA|U|1234
6GB2|1|BA|C|1235
6GB2|1|BA|C|1236
*
6GB2|1|BA|G|1245
6GB2|1|BA|A|1246
6GB2|1|BA|U|1247
6GB2|1|BA|C|1248
6GB2|1|BA|A|1249
6GB2|1|BA|A|1250
6GB2|1|BA|C|1251

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B0

Mitochondrial ribosomal protein L27

Chain B1

Mitochondrial ribosomal protein L28

Chain B6

Mitochondrial ribosomal protein L33

Chain B8

Mitochondrial ribosomal protein L35

Chain BP

Mitochondrial ribosomal protein L15