J3_6GBZ_007

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6GBZ|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GBZ_007 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1249

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6GBZ|1|A|C|1306
6GBZ|1|A|A|1307
6GBZ|1|A|A|1308
6GBZ|1|A|G|1309
*
6GBZ|1|A|C|1605
6GBZ|1|A|C|1606
6GBZ|1|A|C|1607
6GBZ|1|A|A|1608
6GBZ|1|A|A|1609
6GBZ|1|A|A|1610
6GBZ|1|A|C|1611
*
6GBZ|1|A|G|1620
6GBZ|1|A|U|1621
6GBZ|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34