J3_6GC0_017

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUAGC*GCUGG*CAAA

Length

18 nucleotides

Bulged bases

6GC0|1|A|U|686, 6GC0|1|A|A|792, 6GC0|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC0|1|A|U|683
6GC0|1|A|G|684
6GC0|1|A|A|685
6GC0|1|A|U|686
6GC0|1|A|C|687
6GC0|1|A|U|688
6GC0|1|A|A|689
6GC0|1|A|G|690
6GC0|1|A|C|691
*
6GC0|1|A|G|771
6GC0|1|A|C|772
6GC0|1|A|U|773
6GC0|1|A|G|774
6GC0|1|A|G|775
*
6GC0|1|A|C|791
6GC0|1|A|A|792
6GC0|1|A|A|793
6GC0|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2