J3_6GC4_013
3D structure
- PDB id
- 6GC4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit assembly intermediate state 3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6GC4|1|A|A|504, 6GC4|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GC4_013 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.0946
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6GC4|1|A|G|30
6GC4|1|A|C|31
*
6GC4|1|A|G|474
6GC4|1|A|C|475
6GC4|1|A|G|476
6GC4|1|A|A|477
6GC4|1|A|A|478
6GC4|1|A|A|479
6GC4|1|A|A|480
6GC4|1|A|G|481
6GC4|1|A|A|482
6GC4|1|A|A|483
6GC4|1|A|C|484
*
6GC4|1|A|G|496
6GC4|1|A|A|497
6GC4|1|A|G|498
6GC4|1|A|U|499
6GC4|1|A|G|500
6GC4|1|A|A|501
6GC4|1|A|A|502
6GC4|1|A|A|503
6GC4|1|A|A|504
6GC4|1|A|A|505
6GC4|1|A|G|506
6GC4|1|A|A|507
6GC4|1|A|A|508
6GC4|1|A|C|509
6GC4|1|A|C|510
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: