3D structure

PDB id
6GC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 3
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6GC4_015 not in the Motif Atlas
Homologous match to J3_7A0S_019
Geometric discrepancy: 0.1211
The information below is about J3_7A0S_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6GC4|1|A|G|1424
6GC4|1|A|G|1425
6GC4|1|A|G|1426
6GC4|1|A|A|1427
6GC4|1|A|C|1428
6GC4|1|A|G|1429
*
6GC4|1|A|C|1564
6GC4|1|A|C|1565
*
6GC4|1|A|G|1568
6GC4|1|A|A|1569
6GC4|1|A|A|1570
6GC4|1|A|A|1571
6GC4|1|A|A|1572
6GC4|1|A|G|1573
6GC4|1|A|C|1574

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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