J3_6GC4_015

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GC4_015 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1211

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6GC4|1|A|G|1424
6GC4|1|A|G|1425
6GC4|1|A|G|1426
6GC4|1|A|A|1427
6GC4|1|A|C|1428
6GC4|1|A|G|1429
*
6GC4|1|A|C|1564
6GC4|1|A|C|1565
*
6GC4|1|A|G|1568
6GC4|1|A|A|1569
6GC4|1|A|A|1570
6GC4|1|A|A|1571
6GC4|1|A|A|1572
6GC4|1|A|G|1573
6GC4|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2