J3_6GQ1_010
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GQ1_010 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1759
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6GQ1|1|1|U|1526
6GQ1|1|1|C|1527
6GQ1|1|1|G|1528
6GQ1|1|1|A|1529
6GQ1|1|1|U|1530
6GQ1|1|1|C|1531
*
6GQ1|1|1|G|1591
6GQ1|1|1|G|1592
6GQ1|1|1|A|1593
6GQ1|1|1|A|1594
6GQ1|1|1|U|1595
*
6GQ1|1|1|A|1612
6GQ1|1|1|A|1613
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- 60S ribosomal protein L25
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- 60S ribosomal protein L38
- Chain l
- 60S ribosomal protein L39
Coloring options: