3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
6GQ1|1|2|U|1473, 6GQ1|1|2|G|1572
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6GQ1_030 not in the Motif Atlas
Homologous match to J3_4V88_041
Geometric discrepancy: 0.5813
The information below is about J3_4V88_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.3
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

6GQ1|1|2|C|1470
6GQ1|1|2|A|1471
6GQ1|1|2|C|1472
6GQ1|1|2|U|1473
6GQ1|1|2|G|1474
*
6GQ1|1|2|C|1533
6GQ1|1|2|G|1534
6GQ1|1|2|U|1535
6GQ1|1|2|G|1536
6GQ1|1|2|C|1537
6GQ1|1|2|U|1538
6GQ1|1|2|G|1539
6GQ1|1|2|G|1540
*
6GQ1|1|2|C|1571
6GQ1|1|2|G|1572
6GQ1|1|2|A|1573
6GQ1|1|2|G|1574

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AI
40S ribosomal protein S18-A
Chain AJ
40S ribosomal protein S19-A
Chain AP
40S ribosomal protein S25-A
Chain v
40S ribosomal protein S5

Coloring options:


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