J3_6GQ1_033

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

6GQ1|1|1|U|343, 6GQ1|1|1|C|346, 6GQ1|1|1|A|351, 6GQ1|1|4|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GQ1_033 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.1277

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6GQ1|1|1|C|340
6GQ1|1|1|G|341
6GQ1|1|1|A|342
6GQ1|1|1|U|343
6GQ1|1|1|A|344
6GQ1|1|1|G|345
6GQ1|1|1|C|346
6GQ1|1|1|G|347
6GQ1|1|1|A|348
6GQ1|1|1|A|349
6GQ1|1|1|C|350
6GQ1|1|1|A|351
6GQ1|1|1|A|352
6GQ1|1|1|G|353
6GQ1|1|1|U|354
6GQ1|1|1|A|355
6GQ1|1|1|C|356
*
6GQ1|1|1|G|363
6GQ1|1|1|G|364
6GQ1|1|1|A|365
6GQ1|1|1|A|366
6GQ1|1|1|A|367
6GQ1|1|1|G|368
*
6GQ1|1|4|C|21
6GQ1|1|4|U|22
6GQ1|1|4|U|23
6GQ1|1|4|G|24

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Chain 4

5S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A

Chain j

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L39