J3_6GQ1_034
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6GQ1|1|1|A|398, 6GQ1|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GQ1_034 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1484
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6GQ1|1|1|A|369
6GQ1|1|1|U|370
6GQ1|1|1|G|371
6GQ1|1|1|A|372
6GQ1|1|1|A|373
6GQ1|1|1|A|374
6GQ1|1|1|A|375
6GQ1|1|1|G|376
6GQ1|1|1|A|377
6GQ1|1|1|A|378
6GQ1|1|1|C|379
*
6GQ1|1|1|G|390
6GQ1|1|1|A|391
6GQ1|1|1|G|392
6GQ1|1|1|U|393
6GQ1|1|1|G|394
6GQ1|1|1|A|395
6GQ1|1|1|A|396
6GQ1|1|1|A|397
6GQ1|1|1|A|398
6GQ1|1|1|A|399
6GQ1|1|1|G|400
6GQ1|1|1|U|401
6GQ1|1|1|A|402
6GQ1|1|1|C|403
6GQ1|1|1|G|404
*
6GQ1|1|4|C|19
6GQ1|1|4|U|20
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 4
- 5S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
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