J3_6GQ1_037
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 6GQ1|1|1|C|2760, 6GQ1|1|1|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GQ1_037 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1215
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6GQ1|1|1|G|2651
6GQ1|1|1|U|2652
6GQ1|1|1|C|2653
*
6GQ1|1|1|G|2754
6GQ1|1|1|C|2755
6GQ1|1|1|C|2756
6GQ1|1|1|U|2757
6GQ1|1|1|A|2758
6GQ1|1|1|U|2759
6GQ1|1|1|C|2760
6GQ1|1|1|G|2761
6GQ1|1|1|A|2762
6GQ1|1|1|U|2763
6GQ1|1|1|C|2764
6GQ1|1|1|C|2765
*
6GQ1|1|1|G|2793
6GQ1|1|1|G|2794
6GQ1|1|1|U|2795
6GQ1|1|1|G|2796
6GQ1|1|1|C|2797
6GQ1|1|1|C|2798
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain AX
- Transfer RNA; tRNA
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L42-A
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