J3_6GQ1_044
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GQ1_044 not in the Motif Atlas
- Homologous match to J3_8P9A_052
- Geometric discrepancy: 0.3335
- The information below is about J3_8P9A_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6GQ1|1|1|G|1230
6GQ1|1|1|A|1231
6GQ1|1|1|C|1232
*
6GQ1|1|1|G|1256
6GQ1|1|1|C|1257
6GQ1|1|1|U|1258
6GQ1|1|1|A|1259
6GQ1|1|1|A|1260
6GQ1|1|1|G|1261
6GQ1|1|1|G|1262
*
6GQ1|1|1|C|1277
6GQ1|1|1|A|1278
6GQ1|1|1|C|1279
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain P0
- 60S acidic ribosomal protein P0
- Chain P2
- 60S ribosomal protein L12-A
Coloring options: