J3_6GQ1_044

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GQ1_044 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.3335

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6GQ1|1|1|G|1230
6GQ1|1|1|A|1231
6GQ1|1|1|C|1232
*
6GQ1|1|1|G|1256
6GQ1|1|1|C|1257
6GQ1|1|1|U|1258
6GQ1|1|1|A|1259
6GQ1|1|1|A|1260
6GQ1|1|1|G|1261
6GQ1|1|1|G|1262
*
6GQ1|1|1|C|1277
6GQ1|1|1|A|1278
6GQ1|1|1|C|1279

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain P0

60S acidic ribosomal protein P0

Chain P2

60S ribosomal protein L12-A