3D structure

PDB id
6GQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAU*AGAUG*CUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6GQB_016 not in the Motif Atlas
Homologous match to J3_5TBW_015
Geometric discrepancy: 0.2389
The information below is about J3_5TBW_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_48314.1
Basepair signature
cWW-cWW-F-cWW-F-cWW-F
Number of instances in this motif group
1

Unit IDs

6GQB|1|1|C|3298
6GQB|1|1|A|3299
6GQB|1|1|U|3300
*
6GQB|1|1|A|3314
6GQB|1|1|G|3315
6GQB|1|1|A|3316
6GQB|1|1|U|3317
6GQB|1|1|G|3318
*
6GQB|1|1|C|3388
6GQB|1|1|U|3389
6GQB|1|1|G|3390

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain P
60S ribosomal protein L17-A
Chain d
60S ribosomal protein L31-A

Coloring options:


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