J3_6GQB_027
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAACCUAC*GAGGGAC*GUUUG
- Length
- 20 nucleotides
- Bulged bases
- 6GQB|1|2|U|1340, 6GQB|1|2|U|1413, 6GQB|1|2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQB|1|2|U|1335
6GQB|1|2|A|1336
6GQB|1|2|A|1337
6GQB|1|2|C|1338
6GQB|1|2|C|1339
6GQB|1|2|U|1340
6GQB|1|2|A|1341
6GQB|1|2|C|1342
*
6GQB|1|2|G|1383
6GQB|1|2|A|1384
6GQB|1|2|G|1385
6GQB|1|2|G|1386
6GQB|1|2|G|1387
6GQB|1|2|A|1388
6GQB|1|2|C|1389
*
6GQB|1|2|G|1412
6GQB|1|2|U|1413
6GQB|1|2|U|1414
6GQB|1|2|U|1415
6GQB|1|2|G|1416
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AG
- 40S ribosomal protein S16-A
- Chain AH
- 40S ribosomal protein S17-B
- Chain AK
- 40S ribosomal protein S20
- Chain AT
- 40S ribosomal protein S29-A
- Chain AV
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain v
- 40S ribosomal protein S5
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