J3_6GQB_036
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUUCUUCAC*GUAACU*AGGAAUAGUUUUC
- Length
- 30 nucleotides
- Bulged bases
- 6GQB|1|1|U|1629, 6GQB|1|1|U|1815, 6GQB|1|1|U|1820, 6GQB|1|1|U|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQB|1|1|G|1623
6GQB|1|1|G|1624
6GQB|1|1|A|1625
6GQB|1|1|U|1626
6GQB|1|1|U|1627
6GQB|1|1|C|1628
6GQB|1|1|U|1629
6GQB|1|1|U|1630
6GQB|1|1|C|1631
6GQB|1|1|A|1632
6GQB|1|1|C|1633
*
6GQB|1|1|G|1640
6GQB|1|1|U|1641
6GQB|1|1|A|1642
6GQB|1|1|A|1643
6GQB|1|1|C|1644
6GQB|1|1|U|1645
*
6GQB|1|1|A|1810
6GQB|1|1|G|1811
6GQB|1|1|G|1812
6GQB|1|1|A|1813
6GQB|1|1|A|1814
6GQB|1|1|U|1815
6GQB|1|1|A|1816
6GQB|1|1|G|1817
6GQB|1|1|U|1818
6GQB|1|1|U|1819
6GQB|1|1|U|1820
6GQB|1|1|U|1821
6GQB|1|1|C|1822
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain Z
- 60S ribosomal protein L27-A
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- 60S ribosomal protein L38
Coloring options: