J3_6GQB_039
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 6GQB|1|1|A|3215, 6GQB|1|1|C|3217, 6GQB|1|1|A|3268, 6GQB|1|1|U|3270, 6GQB|1|1|C|3272, 6GQB|1|1|U|3275, 6GQB|1|1|G|3276, 6GQB|1|1|U|3277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GQB_039 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1851
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6GQB|1|1|U|3171
6GQB|1|1|A|3172
6GQB|1|1|G|3173
6GQB|1|1|A|3174
6GQB|1|1|U|3175
6GQB|1|1|G|3176
*
6GQB|1|1|C|3212
6GQB|1|1|A|3213
6GQB|1|1|U|3214
6GQB|1|1|A|3215
6GQB|1|1|G|3216
6GQB|1|1|C|3217
6GQB|1|1|A|3218
6GQB|1|1|G|3219
6GQB|1|1|G|3220
*
6GQB|1|1|C|3265
6GQB|1|1|G|3266
6GQB|1|1|A|3267
6GQB|1|1|A|3268
6GQB|1|1|U|3269
6GQB|1|1|U|3270
6GQB|1|1|G|3271
6GQB|1|1|C|3272
6GQB|1|1|A|3273
6GQB|1|1|A|3274
6GQB|1|1|U|3275
6GQB|1|1|G|3276
6GQB|1|1|U|3277
6GQB|1|1|C|3278
6GQB|1|1|A|3279
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain P
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: