J3_6GQB_042

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACCAG*CUAGUAAGC*GUUGAUUACGU

Length

25 nucleotides

Bulged bases

6GQB|1|2|G|1584, 6GQB|1|2|C|1615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|A|1160
6GQB|1|2|C|1161
6GQB|1|2|C|1162
6GQB|1|2|A|1163
6GQB|1|2|G|1164
*
6GQB|1|2|C|1581
6GQB|1|2|U|1582
6GQB|1|2|A|1583
6GQB|1|2|G|1584
6GQB|1|2|U|1585
6GQB|1|2|A|1586
6GQB|1|2|A|1587
6GQB|1|2|G|1588
6GQB|1|2|C|1589
*
6GQB|1|2|G|1607
6GQB|1|2|U|1608
6GQB|1|2|U|1609
6GQB|1|2|G|1610
6GQB|1|2|A|1611
6GQB|1|2|U|1612
6GQB|1|2|U|1613
6GQB|1|2|A|1614
6GQB|1|2|C|1615
6GQB|1|2|G|1616
6GQB|1|2|U|1617

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AJ

40S ribosomal protein S19-A

Chain AS

40S ribosomal protein S28-A

Chain v

40S ribosomal protein S5