J3_6GQB_043

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGACA*UGGGUGG*CUUAGACG

Length

21 nucleotides

Bulged bases

6GQB|1|2|A|1217, 6GQB|1|2|U|1443, 6GQB|1|2|G|1445, 6GQB|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|C|1216
6GQB|1|2|A|1217
6GQB|1|2|G|1218
6GQB|1|2|A|1219
6GQB|1|2|C|1220
6GQB|1|2|A|1221
*
6GQB|1|2|U|1262
6GQB|1|2|G|1263
6GQB|1|2|G|1264
6GQB|1|2|G|1265
6GQB|1|2|U|1266
6GQB|1|2|G|1267
6GQB|1|2|G|1268
*
6GQB|1|2|C|1441
6GQB|1|2|U|1442
6GQB|1|2|U|1443
6GQB|1|2|A|1444
6GQB|1|2|G|1445
6GQB|1|2|A|1446
6GQB|1|2|C|1447
6GQB|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S10-A

Chain AT

40S ribosomal protein S29-A

Chain AZ

Elongation factor 2

Chain t

40S ribosomal protein S3