J3_6GQB_045

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6GQB|1|2|A|217, 6GQB|1|2|C|239, 6GQB|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|A|213
6GQB|1|2|G|214
6GQB|1|2|A|215
6GQB|1|2|U|216
6GQB|1|2|A|217
6GQB|1|2|A|218
6GQB|1|2|A|219
6GQB|1|2|A|220
6GQB|1|2|A|221
6GQB|1|2|A|222
6GQB|1|2|U|223
6GQB|1|2|C|224
6GQB|1|2|A|225
6GQB|1|2|A|226
6GQB|1|2|U|227
6GQB|1|2|G|228
*
6GQB|1|2|C|237
6GQB|1|2|U|238
6GQB|1|2|C|239
6GQB|1|2|U|240
6GQB|1|2|U|241
6GQB|1|2|U|242
6GQB|1|2|G|243
*
6GQB|1|2|C|250
6GQB|1|2|A|251
6GQB|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain u

40S ribosomal protein S4-A

Chain w

40S ribosomal protein S6-A