J3_6GQV_016

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GQV_016 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1494

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6GQV|1|2|A|41
6GQV|1|2|G|42
*
6GQV|1|2|C|433
6GQV|1|2|G|434
6GQV|1|2|C|435
6GQV|1|2|A|436
6GQV|1|2|A|437
6GQV|1|2|A|438
6GQV|1|2|U|439
*
6GQV|1|2|A|464
6GQV|1|2|G|465
6GQV|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain AX

Elongation factor 2

Chain z

40S ribosomal protein S9-A