J3_6GQV_025

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GQV_025 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1654

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6GQV|1|2|U|1293
6GQV|1|2|G|1294
*
6GQV|1|2|U|1303
6GQV|1|2|G|1304
6GQV|1|2|U|1305
6GQV|1|2|C|1306
*
6GQV|1|2|G|1318
6GQV|1|2|A|1319
6GQV|1|2|U|1320
6GQV|1|2|A|1321
6GQV|1|2|A|1322

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B

Chain q

40S ribosomal protein S0-A

Chain s

40S ribosomal protein S2