J3_6GSJ_059

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6GSJ|1|14|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSJ_059 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0736

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6GSJ|1|14|C|297
6GSJ|1|14|G|298
6GSJ|1|14|A|299
6GSJ|1|14|A|300
6GSJ|1|14|G|301
*
6GSJ|1|14|C|316
6GSJ|1|14|G|317
6GSJ|1|14|C|318
6GSJ|1|14|C|319
6GSJ|1|14|A|320
6GSJ|1|14|G|321
6GSJ|1|14|A|322
6GSJ|1|14|G|323
6GSJ|1|14|A|324
6GSJ|1|14|G|325
*
6GSJ|1|14|C|337
6GSJ|1|14|G|338
6GSJ|1|14|U|339
6GSJ|1|14|A|340
6GSJ|1|14|G|341

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain C5

50S ribosomal protein L24