J3_6GSJ_070

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSJ_070 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.056

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6GSJ|1|1H|G|1424
6GSJ|1|1H|G|1425
6GSJ|1|1H|G|1426
6GSJ|1|1H|A|1427
6GSJ|1|1H|C|1428
6GSJ|1|1H|G|1429
*
6GSJ|1|1H|C|1564
6GSJ|1|1H|C|1565
*
6GSJ|1|1H|G|1568
6GSJ|1|1H|A|1569
6GSJ|1|1H|A|1570
6GSJ|1|1H|A|1571
6GSJ|1|1H|A|1572
6GSJ|1|1H|G|1573
6GSJ|1|1H|C|1574

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2