J3_6GSK_021

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_021 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.059

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6GSK|1|14|U|2091
6GSK|1|14|U|2092
6GSK|1|14|G|2093
*
6GSK|1|14|C|2196
6GSK|1|14|U|2197
6GSK|1|14|A|2198
6GSK|1|14|A|2199
6GSK|1|14|C|2205
*
6GSK|1|14|G|2219
6GSK|1|14|G|2224
6GSK|1|14|A|2225
6GSK|1|14|C|2226
6GSK|1|14|A|2227
6GSK|1|14|G|2228

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 3E

30S ribosomal protein S4

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28