J3_6GSK_023

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6GSK|1|14|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_023 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.1277

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6GSK|1|14|C|2517
6GSK|1|14|A|2518
6GSK|1|14|U|2519
6GSK|1|14|C|2520
*
6GSK|1|14|G|2545
6GSK|1|14|U|2546
6GSK|1|14|U|2547
*
6GSK|1|14|A|2561
6GSK|1|14|U|2562
6GSK|1|14|U|2563
6GSK|1|14|A|2564
6GSK|1|14|A|2565
6GSK|1|14|A|2566
6GSK|1|14|G|2567

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 25

50S ribosomal protein L14