J3_6GSK_032
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUAC*GGCGAC
- Length
- 27 nucleotides
- Bulged bases
- 6GSK|1|1G|A|975, 6GSK|1|1G|G|976, 6GSK|1|1G|A|978, 6GSK|1|1G|G|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSK_032 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.5856
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GSK|1|1G|G|954
6GSK|1|1G|U|955
6GSK|1|1G|U|956
6GSK|1|1G|U|957
6GSK|1|1G|A|958
6GSK|1|1G|A|959
6GSK|1|1G|U|960
6GSK|1|1G|U|961
6GSK|1|1G|C|962
*
6GSK|1|1G|G|973
6GSK|1|1G|A|974
6GSK|1|1G|A|975
6GSK|1|1G|G|976
6GSK|1|1G|A|977
6GSK|1|1G|A|978
6GSK|1|1G|C|979
6GSK|1|1G|C|980
6GSK|1|1G|U|981
6GSK|1|1G|U|982
6GSK|1|1G|A|983
6GSK|1|1G|C|984
*
6GSK|1|1G|G|1221
6GSK|1|1G|G|1222
6GSK|1|1G|C|1223
6GSK|1|1G|G|1224
6GSK|1|1G|A|1225
6GSK|1|1G|C|1226
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain AA
- 30S ribosomal protein S19
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