J3_6GSK_037
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 6GSK|1|1G|U|1240, 6GSK|1|1G|C|1297, 6GSK|1|1G|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSK_037 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1738
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GSK|1|1G|C|1237
6GSK|1|1G|A|1238
6GSK|1|1G|A|1239
6GSK|1|1G|U|1240
6GSK|1|1G|G|1241
*
6GSK|1|1G|C|1296
6GSK|1|1G|C|1297
6GSK|1|1G|C|1298
6GSK|1|1G|A|1299
6GSK|1|1G|G|1300
6GSK|1|1G|U|1301
6GSK|1|1G|U|1302
6GSK|1|1G|C|1303
*
6GSK|1|1G|G|1334
6GSK|1|1G|C|1335
6GSK|1|1G|C|1336
6GSK|1|1G|G|1337
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1B
- 30S ribosomal protein Thx
- Chain 3L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 62
- 30S ribosomal protein S7
Coloring options: