J3_6GSK_041

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6GSK|1|1H|G|686, 6GSK|1|1H|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_041 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0914

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6GSK|1|1H|C|683
6GSK|1|1H|G|684
6GSK|1|1H|A|685
6GSK|1|1H|G|686
6GSK|1|1H|C|687
6GSK|1|1H|U|688
6GSK|1|1H|A|689
*
6GSK|1|1H|U|773
6GSK|1|1H|A|774
6GSK|1|1H|G|775
*
6GSK|1|1H|C|791
6GSK|1|1H|G|792
6GSK|1|1H|A|793
6GSK|1|1H|G|794

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain P8

50S ribosomal protein L34