J3_6GSK_045

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_045 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0787

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6GSK|1|1H|G|1344
6GSK|1|1H|C|1345
6GSK|1|1H|G|1346
6GSK|1|1H|G|1347
6GSK|1|1H|G|1348
6GSK|1|1H|A|1349
6GSK|1|1H|C|1350
*
6GSK|1|1H|G|1381
6GSK|1|1H|G|1382
6GSK|1|1H|C|1383
6GSK|1|1H|A|1384
6GSK|1|1H|G|1385
*
6GSK|1|1H|C|1402
6GSK|1|1H|C|1403

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23