J3_6GSK_048

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6GSK|1|1H|A|2518, 6GSK|1|1H|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_048 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0692

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6GSK|1|1H|C|2517
6GSK|1|1H|A|2518
6GSK|1|1H|U|2519
6GSK|1|1H|C|2520
*
6GSK|1|1H|G|2545
6GSK|1|1H|U|2546
6GSK|1|1H|U|2547
*
6GSK|1|1H|A|2561
6GSK|1|1H|U|2562
6GSK|1|1H|U|2563
6GSK|1|1H|A|2564
6GSK|1|1H|A|2565
6GSK|1|1H|A|2566
6GSK|1|1H|G|2567

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 68

50S ribosomal protein L14