J3_6GSK_056
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6GSK|1|14|C|34, 6GSK|1|14|U|448, 6GSK|1|14|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSK_056 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1362
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6GSK|1|14|C|32
6GSK|1|14|U|33
6GSK|1|14|C|34
6GSK|1|14|G|35
*
6GSK|1|14|C|445
6GSK|1|14|G|446
6GSK|1|14|A|447
6GSK|1|14|U|448
6GSK|1|14|A|449
6GSK|1|14|G|450
6GSK|1|14|C|451
6GSK|1|14|G|452
6GSK|1|14|C|453
6GSK|1|14|A|454
6GSK|1|14|C|455
6GSK|1|14|C|456
6GSK|1|14|A|457
6GSK|1|14|G|458
6GSK|1|14|U|459
6GSK|1|14|A|460
6GSK|1|14|C|461
*
6GSK|1|14|G|468
6GSK|1|14|G|469
6GSK|1|14|A|470
6GSK|1|14|A|471
6GSK|1|14|A|472
6GSK|1|14|G|473
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 39
- 50S ribosomal protein L4
- Chain 85
- 50S ribosomal protein L20
- Chain B5
- 50S ribosomal protein L23
- Chain L5
- 50S ribosomal protein L34
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