J3_6GSK_059

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_059 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0798

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6GSK|1|14|G|1424
6GSK|1|14|G|1425
6GSK|1|14|G|1426
6GSK|1|14|A|1427
6GSK|1|14|C|1428
6GSK|1|14|G|1429
*
6GSK|1|14|C|1564
6GSK|1|14|C|1565
*
6GSK|1|14|G|1568
6GSK|1|14|A|1569
6GSK|1|14|A|1570
6GSK|1|14|A|1571
6GSK|1|14|A|1572
6GSK|1|14|G|1573
6GSK|1|14|C|1574

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2