J3_6GSK_060
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6GSK|1|14|A|2388, 6GSK|1|14|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSK_060 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1085
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6GSK|1|14|G|2282
6GSK|1|14|C|2283
6GSK|1|14|C|2284
*
6GSK|1|14|G|2384
6GSK|1|14|C|2385
6GSK|1|14|C|2386
6GSK|1|14|U|2387
6GSK|1|14|A|2388
6GSK|1|14|G|2389
6GSK|1|14|U|2390
6GSK|1|14|G|2391
6GSK|1|14|A|2392
6GSK|1|14|A|2393
6GSK|1|14|C|2394
6GSK|1|14|C|2395
*
6GSK|1|14|G|2421
6GSK|1|14|A|2422
6GSK|1|14|U|2423
6GSK|1|14|C|2424
6GSK|1|14|A|2425
6GSK|1|14|A|2426
6GSK|1|14|C|2427
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 35
- 50S ribosomal protein L15
- Chain 3L
- Transfer RNA; tRNA
- Chain E5
- 50S ribosomal protein L27
- Chain F5
- 50S ribosomal protein L28
- Chain M5
- 50S ribosomal protein L35
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