J3_6GSK_070

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6GSK|1|1H|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_070 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0786

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6GSK|1|1H|C|297
6GSK|1|1H|G|298
6GSK|1|1H|A|299
6GSK|1|1H|A|300
6GSK|1|1H|G|301
*
6GSK|1|1H|C|316
6GSK|1|1H|G|317
6GSK|1|1H|C|318
6GSK|1|1H|C|319
6GSK|1|1H|A|320
6GSK|1|1H|G|321
6GSK|1|1H|A|322
6GSK|1|1H|G|323
6GSK|1|1H|A|324
6GSK|1|1H|G|325
*
6GSK|1|1H|C|337
6GSK|1|1H|G|338
6GSK|1|1H|U|339
6GSK|1|1H|A|340
6GSK|1|1H|G|341

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain G8

50S ribosomal protein L24