J3_6GSL_015

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6GSL|1|14|G|686, 6GSL|1|14|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSL_015 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1145

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6GSL|1|14|C|683
6GSL|1|14|G|684
6GSL|1|14|A|685
6GSL|1|14|G|686
6GSL|1|14|C|687
6GSL|1|14|U|688
6GSL|1|14|A|689
*
6GSL|1|14|U|773
6GSL|1|14|A|774
6GSL|1|14|G|775
*
6GSL|1|14|C|791
6GSL|1|14|G|792
6GSL|1|14|A|793
6GSL|1|14|G|794

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34