J3_6GSL_047

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSL_047 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1176

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6GSL|1|1H|G|1344
6GSL|1|1H|C|1345
6GSL|1|1H|G|1346
6GSL|1|1H|G|1347
6GSL|1|1H|G|1348
6GSL|1|1H|A|1349
6GSL|1|1H|C|1350
*
6GSL|1|1H|G|1381
6GSL|1|1H|G|1382
6GSL|1|1H|C|1383
6GSL|1|1H|A|1384
6GSL|1|1H|G|1385
*
6GSL|1|1H|C|1402
6GSL|1|1H|C|1403

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23