J3_6GSL_048

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSL_048 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0587

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6GSL|1|1H|U|2091
6GSL|1|1H|U|2092
6GSL|1|1H|G|2093
*
6GSL|1|1H|C|2196
6GSL|1|1H|U|2197
6GSL|1|1H|A|2198
6GSL|1|1H|A|2199
6GSL|1|1H|C|2205
*
6GSL|1|1H|G|2219
6GSL|1|1H|G|2224
6GSL|1|1H|A|2225
6GSL|1|1H|C|2226
6GSL|1|1H|A|2227
6GSL|1|1H|G|2228

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28