J3_6GSM_001

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSM_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1565

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6GSM|1|2|A|41
6GSM|1|2|G|42
*
6GSM|1|2|C|432
6GSM|1|2|G|433
6GSM|1|2|C|434
6GSM|1|2|A|435
6GSM|1|2|A|436
6GSM|1|2|A|437
6GSM|1|2|U|438
*
6GSM|1|2|A|463
6GSM|1|2|G|464
6GSM|1|2|U|465

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain X

RPS23

Chain p

Eukaryotic translation initiation factor 3 subunit B