J3_6GSM_009
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSM_009 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.2133
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6GSM|1|2|U|1282
6GSM|1|2|C|1283
6GSM|1|2|U|1284
6GSM|1|2|U|1285
6GSM|1|2|A|1286
6GSM|1|2|G|1287
*
6GSM|1|2|C|1326
6GSM|1|2|G|1327
6GSM|1|2|A|1328
6GSM|1|2|G|1329
6GSM|1|2|A|1330
6GSM|1|2|C|1331
*
6GSM|1|2|G|1417
6GSM|1|2|C|1418
6GSM|1|2|A|1419
6GSM|1|2|A|1420
6GSM|1|2|U|1421
6GSM|1|2|A|1422
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- KLLA0F09812p
- Chain D
- KLLA0D08305p
- Chain Q
- 40S ribosomal protein S16
- Chain R
- KLLA0B01474p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
Coloring options: