J3_6GSM_011
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 6GSM|1|2|U|1411, 6GSM|1|2|U|1412
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSM_011 not in the Motif Atlas
- Homologous match to J3_8C3A_043
- Geometric discrepancy: 0.2481
- The information below is about J3_8C3A_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.3
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6GSM|1|2|A|1335
6GSM|1|2|A|1336
6GSM|1|2|C|1337
*
6GSM|1|2|G|1384
6GSM|1|2|G|1385
6GSM|1|2|A|1386
6GSM|1|2|C|1387
*
6GSM|1|2|G|1410
6GSM|1|2|U|1411
6GSM|1|2|U|1412
6GSM|1|2|U|1413
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- KLLA0D10659p
- Chain Q
- 40S ribosomal protein S16
- Chain R
- KLLA0B01474p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain g
- KLLA0E12277p
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